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Metagenome-assembled genome: BRZ_SB__bin130

Identifiers
BioSample: SAMEA110134586; SRA: ERS12233406
Organism
uncultured Faecalicoccus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalicoccus; environmental samples
Attributes
collection date2016
broad-scale environmental contexthost-associated habitat
local-scale environmental contexthost-associated habitat
environmental mediumcaecal content
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameMetaChick
sample nameBRZ_SB__bin130
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-06-17
ENA-LAST-UPDATE2022-06-17
External IdSAMEA110134586
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2022-06-17T16:20:09Z
INSDC last update2022-06-17T16:20:09Z
INSDC statuspublic
Submitter IdBRZ_SB__bin130
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.3
binning parametersMetaBAT default parameters
binning softwareMetaBAT v2.12.1
completeness score96.25
completeness softwarecheckm v1.1.3
contamination score2.83
geographic location (latitude)48.8583
geographic location (longitude)2.2923
geographic location (region and locality)Jouy-en-Josas
metagenomic sourcechicken gut metagenome
sample derived fromERS4542171
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542171

BioProject
PRJEB53581
Retrieve all samples from this project

Submission
EBI; 2022-06-18
Accession:
SAMEA110134586
ID:
29194761

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