U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

Metagenome-assembled genome: BRZ_PD__bin86

Identifiers
BioSample: SAMEA110136092; SRA: ERS12234912
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples
Attributes
collection date2016
broad-scale environmental contexthost-associated habitat
local-scale environmental contexthost-associated habitat
environmental mediumcaecal content
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameMetaChick
sample nameBRZ_PD__bin86
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-06-17
ENA-LAST-UPDATE2022-06-17
External IdSAMEA110136092
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2022-06-17T16:20:19Z
INSDC last update2022-06-17T16:20:19Z
INSDC statuspublic
Submitter IdBRZ_PD__bin86
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.3
binning parametersMetaBAT default parameters
binning softwareMetaBAT v2.12.1
completeness score70.14
completeness softwarecheckm v1.1.3
contamination score1.34
geographic location (latitude)48.8583
geographic location (longitude)2.2923
geographic location (region and locality)Jouy-en-Josas
metagenomic sourcechicken gut metagenome
sample derived fromERS4542106
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542106

BioProject
PRJEB53581
Retrieve all samples from this project

Submission
EBI; 2022-06-18
Accession:
SAMEA110136092
ID:
29196267

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center