Metagenome-assembled genome: BRZ_HE__bin56

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Lactobacillus gallinarum
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

collection date	2016
broad-scale environmental context	host-associated habitat
local-scale environmental context	host-associated habitat
environmental medium	caecal content
geographic location	France
investigation type	metagenome-assembled genome
isolation source	chicken caecal content
project name	MetaChick
sample name	BRZ_HE__bin56
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2022-06-17
ENA-LAST-UPDATE	2022-06-17
External Id	SAMEA110134606
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-06-17T16:20:17Z
INSDC last update	2022-06-17T16:20:17Z
INSDC status	public
Submitter Id	BRZ_HE__bin56
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.3
binning parameters	MetaBAT default parameters
binning software	MetaBAT v2.12.1
completeness score	93.98
completeness software	checkm v1.1.3
contamination score	0.06
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	chicken gut metagenome
sample derived from	ERS4542036
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach