Metagenome-assembled genome: SRR6727992_bin.1_meta... - BioSample

Metagenome-assembled genome: SRR6727992_bin.1_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111463821; SRA: ERS13557851

Organism: Shewanella putrefaciens
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella

Attributes

broad-scale environmental context	Fish digestive system
collection date	2017-04-01
environmental medium	Gut content
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	fish metagenome
project name	The goal of this project is to investigate prey items of an endangered fish species, Delta Smelt Hypomesus transpacificus
sample name	SRR6727992_bin.1_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-10-13T12:29:00Z
ENA-LAST-UPDATE	2022-10-13T12:29:00Z
External Id	SAMEA111463821
INSDC center name	EMG
INSDC first public	2022-10-13T12:29:00Z
INSDC last update	2022-10-13T12:29:00Z
INSDC status	public
Submitter Id	SRR6727992_bin.1_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EBI-EMG
completeness score	51.23
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	37.824673
geographic location (longitude)	-121.59569
local environmental context	Gut
metagenomic source	fish metagenome
sample derived from	SAMN08180268
scientific_name	Shewanella putrefaciens
sequencing method	Illumina MiSeq
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Alteromonadales;f__Shewanellaceae;g__Shewanella;s__Shewanella putrefaciens
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6727992 of study SRP132896.

BioProject: PRJEB56269
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Submission: EBI; 2022-10-15

Accession:: SAMEA111463821
ID:: 31294627

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Metagenome-assembled genome: SRR6727992_bin.1_metaWRAP_v1.3_MAG

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