Jr-28jun17-104

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Result Filters

Organism: Bacteroidota bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; unclassified Bacteroidota

Attributes

broad-scale environmental context	freshwater ecosystem
collection date	2017-06-28
environmental medium	freshwater lake biome
geographic location	Czech Republic
isolation source	lake water
project name	PRJEB35770
sample name	Jr-28jun17-104
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-11-30T00:19:11Z
ENA-LAST-UPDATE	2022-11-30T00:19:11Z
External Id	SAMEA112173148
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-11-30T00:19:11Z
INSDC last update	2022-11-30T00:19:11Z
INSDC status	public
Submitter Id	Jr-28jun17-104
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	84.49
completeness software	checkm
contamination score	0.97
geographic location (latitude)	48.6189
geographic location (longitude)	14.6731
local environmental context	freshwater lake biome
metagenomic source	lake water metagenome
sample derived from	ERS4146256
scientific_name	Bacteroidetes bacterium
taxonomic identity marker	multi-marker approach

BioProject: PRJEB35770 Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes)
Retrieve all samples from this project