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TE-Jun18-253

Identifiers
BioSample: SAMEA112176084; SRA: ERS14285925
Organism
Bacteroidota bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; unclassified Bacteroidota
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2018-06-11
environmental mediumfreshwater lake biome
geographic locationSwitzerland
isolation sourcelake water
project namePRJEB35640
sample nameTE-Jun18-253
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112176084
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-11-30T12:18:08Z
INSDC last update2022-11-30T12:18:08Z
INSDC statuspublic
Submitter IdTE-Jun18-253
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score73.15
completeness softwarecheckm
contamination score1.35
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS11684480
taxonomic identity markermulti-marker approach
Description

TE-Jun18-253

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112176084
ID:
31963690

BioProject Nucleotide

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