Metagenome-assembled genome: SRR15510219_bin.29_me... - BioSample

Metagenome-assembled genome: SRR15510219_bin.29_metawrap_v1.3_MAG

Identifiers: BioSample: SAMEA112246828; SRA: ERS14357698

Organism: uncultured Bacteroidales bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; environmental samples

Attributes

broad-scale environmental context	mouse digestive system
collection date	2020-05-21
environmental medium	feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Intestinal Virome Diversity Correlates with Intestinal Microbiome Diversity in Ob/Ob and Apoe-/- Mice
sample name	SRR15510219_bin.29_metawrap_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-12-15
ENA-LAST-UPDATE	2022-12-15
External Id	SAMEA112246828
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-12-15T16:21:29Z
INSDC last update	2022-12-15T16:21:29Z
INSDC status	public
Submitter Id	SRR15510219_bin.29_metawrap_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	97.92
completeness software	CheckM
contamination score	0.57
geographic location (latitude)	23.6
geographic location (longitude)	113.15
local environmental context	digestive tube
metagenomic source	mouse gut metagenome
sample derived from	SAMN20821316
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15510219 of study SRP333077.

BioProject: PRJEB57738
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Submission: EBI; 2022-12-16

Accession:: SAMEA112246828
ID:: 32272404

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Metagenome-assembled genome: SRR15510219_bin.29_metawrap_v1.3_MAG

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