U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

Metagenome-assembled genome: dsm_us_coassembly__bin72

Identifiers
BioSample: SAMEA112285632; SRA: ERS14396478
Organism
Candidatus Allocopromorpha excrementipullorum
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacteriaceae incertae sedis; Candidatus Allocopromorpha
Attributes
broad-scale environmental contexthost-associated habitat
collection date2016
environmental mediumcaecal content
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameDSM US
sample namedsm_us_coassembly__bin72
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA112285632
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2023-01-03T16:28:37Z
INSDC last update2023-01-03T16:28:37Z
INSDC statuspublic
Submitter Iddsm_us_coassembly__bin72
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.4
binning parametersdefault parameters
binning softwareSemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3
completeness score88.74
completeness softwarecheckm2 v0.1.3
contamination score3.72
geographic location (latitude)39.768403
geographic location (longitude)-86.158068
geographic location (region and locality)Middle West
local environmental contexthost-associated habitat
metagenomic sourcechicken gut metagenome
sample derived fromERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171
scientific_nameCandidatus Copromorpha excrementipullorum
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

BioProject
PRJEB53667
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA112285632
ID:
32570653

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center