Metagenome-assembled genome: SRR3993028_bin.5_CONC... - BioSample

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Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	2010-10-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Mongolian Metagenome
sample name	SRR3993028_bin.5_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085742
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:16Z
INSDC last update	2023-01-03T00:33:16Z
INSDC status	public
Submitter Id	SRR3993028_bin.5_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	unknown v0.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	98.28
completeness software	CheckM
contamination score	7.05
geographic location (latitude)	43.95
geographic location (longitude)	116.1
metagenomic source	human gut metagenome
sample derived from	SAMN05414957
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3993028 of study SRP080787.