U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

MGBC135386

Identifiers
BioSample: SAMEA112408297; SRA: ERS14518607
Organism
uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples
Attributes
broad-scale environmental contextmouse gut
collection datenot provided
environmental mediumFaeces
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcefeces
project nameMetagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample nameMGBC135386
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-02-03T00:43:38Z
ENA-LAST-UPDATE2023-02-03T00:43:38Z
External IdSAMEA112408297
INSDC center nameUNIVERSITY OF CAMBRIDGE
INSDC first public2023-02-03T00:43:38Z
INSDC last update2023-02-03T00:43:38Z
INSDC statuspublic
Submitter IdMGBC135386
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit_v1.1.1-2-g02102e1
binning parametersdefault parameters, kmer: 4
binning softwaremetaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score57.35
completeness softwareCheckM
contamination score0.00
geographic location (latitude)37.767815
geographic location (longitude)-122.39416
local environmental contextmouse-associated habitat
metagenomic sourcemouse gut metagenome
sample derived fromSRR5927701
scientific_nameuncultured Eubacterium sp.
sequencing methodIllumina
taxonomic identity markermulti-marker approach
BioProject
PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

Submission
EBI; 2023-02-06
Accession:
SAMEA112408297
ID:
33113771

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center