Metagenome-assembled genome: extra-SRR2167616.64_1... - BioSample

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Result Filters

Organism: uncultured Parvibacter sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Parvibacter; environmental samples

Attributes

broad-scale environmental context	mouse digestive system
collection date	2014-07-29
environmental medium	feces
geographic location	Hong Kong
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Metagenomic data from ApcMin/+ mice treated with probiotic LGG
sample name	extra-SRR2167616.64_1677795877
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112724624
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T04:21:54Z
INSDC last update	2023-03-06T04:21:54Z
INSDC status	public
Submitter Id	extra-SRR2167616.64_1677795877
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	50.74
completeness software	CheckM
contamination score	0.81
geographic location (latitude)	22.3356
geographic location (longitude)	114.1826
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMN03996088
scientific_name	uncultured Parvibacter sp.
sequencing method	Illumina HiSeq 1500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2167616 of study SRP062461.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project