Metagenome-assembled genome: extra-SRR8581395.6_16... - BioSample

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Result Filters

Organism: Parabacteroides distasonis ATCC 8503
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides distasonis

Attributes

broad-scale environmental context	mouse digestive system
collection date	2018-05-01
environmental medium	feces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Metagenomic project data
sample name	extra-SRR8581395.6_1677803352
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112732681
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T00:24:53Z
INSDC last update	2023-03-06T00:24:53Z
INSDC status	public
Submitter Id	extra-SRR8581395.6_1677803352
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	96.54
completeness software	CheckM
contamination score	0.64
geographic location (latitude)	39.14
geographic location (longitude)	-84.5
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMN10948887
scientific_name	Parabacteroides distasonis ATCC 8503
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR8581395 of study SRP185977.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project