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Uncultivated Pseudoalteromonas lipolytica UBA5083 genome recovered from ERX552339

Identifiers
BioSample: SAMN06457527; Sample name: Pseudoalteromonas lipolytica UBA5083; SRA: SRS2031019
Organism
Pseudoalteromonas lipolytica
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationmissing
isolateUBA5083
isolation sourcesaline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in ERX552339 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated95.62%
contamination_estimated0.70%
environmental_sampletrue
genome_coverage11.88
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: ERR594412.
Description

Uncultivated genome recovered from an assembly of the ERX552339 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457527
ID:
6457527

BioProject SRA Nucleotide

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