Metagenome-assembled genome: SRR11489782_bin.75_me... - BioSample

Metagenome-assembled genome: SRR11489782_bin.75_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA110411992; SRA: ERS12510347

Organism: Megasphaera elsdenii
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Megasphaera

Attributes

broad-scale environmental context	Pig digestive system
collection date	2017-03-05
environmental medium	Gut content
geographic location	China
investigation type	metagenome-assembled genome
isolation source	pig gut metagenome
project name	Find the difference of gut microbial community structure and function diversity under LDA exposure
sample name	SRR11489782_bin.75_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-25
ENA-LAST-UPDATE	2022-07-25
External Id	SAMEA110411992
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-25T20:32:51Z
INSDC last update	2022-07-25T20:32:51Z
INSDC status	public
Submitter Id	SRR11489782_bin.75_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.02
geographic location (latitude)	30.3
geographic location (longitude)	103.0
local environmental context	Intestine
metagenomic source	pig gut metagenome
sample derived from	SAMN14543226
sequencing method	Illumina HiSeq 3000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Megasphaera;s__Megasphaera elsdenii
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11489782 of study SRP118553.

BioProject: PRJEB53600
Retrieve all samples from this project

Submission: EBI; 2022-07-26

Accession:: SAMEA110411992
ID:: 29972436

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Metagenome-assembled genome: SRR11489782_bin.75_metaWRAP_v1.3_MAG

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