Metagenome-assembled genome: SRR16916845_bin.11_me... - BioSample

Metagenome-assembled genome: SRR16916845_bin.11_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111388618; SRA: ERS13485596

Organism: Oligella urethralis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella

Attributes

broad-scale environmental context	Human reproductive system
collection date	2004-01-01
environmental medium	Vagina
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	vaginal metagenome
project name	16SrRNA gene V3V4 region amplicon and shotgun metagenomic sequence data for reproductive-age mother daughter pairs.
sample name	SRR16916845_bin.11_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-09-23
ENA-LAST-UPDATE	2022-09-23
External Id	SAMEA111388618
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-09-23T16:28:02Z
INSDC last update	2022-09-23T16:28:02Z
INSDC status	public
Submitter Id	SRR16916845_bin.11_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	99.36
completeness software	CheckM
contamination score	0.48
geographic location (latitude)	39.2904
geographic location (longitude)	-76.6122
local environmental context	Vagina
metagenomic source	vaginal metagenome
sample derived from	SAMN23036043
sequencing method	Illumina HiSeq 4000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Alcaligenaceae;g__Oligella;s__Oligella urethralis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR16916845 of study SRP345453.

BioProject: PRJEB53599
Retrieve all samples from this project

Submission: EBI; 2022-09-24

Accession:: SAMEA111388618
ID:: 31003154

BioProject Nucleotide

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

Links from Nucleotide

Metagenome-assembled genome: SRR16916845_bin.11_metaWRAP_v1.3_MAG

Supplemental Content

Related information

Recent activity