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MGBC151280

Identifiers
BioSample: SAMEA112421520; SRA: ERS14531830
Organism
uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples
Attributes
broad-scale environmental contextmouse gut
collection datenot provided
environmental mediumFaeces
geographic locationSingapore
investigation typemetagenome-assembled genome
isolation sourcefeces
project nameMetagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample nameMGBC151280
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-02-03T00:48:14Z
ENA-LAST-UPDATE2023-02-03T00:48:14Z
External IdSAMEA112421520
INSDC center nameUNIVERSITY OF CAMBRIDGE
INSDC first public2023-02-03T00:48:14Z
INSDC last update2023-02-03T00:48:14Z
INSDC statuspublic
Submitter IdMGBC151280
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes_v3.10.1
binning parametersdefault parameters, kmer: 4
binning softwaremetaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score95.95
completeness softwareCheckM
contamination score2.01
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextmouse-associated habitat
metagenomic sourcemouse gut metagenome
sample derived fromERR4079291
scientific_nameuncultured Eubacterium sp.
sequencing methodIllumina
taxonomic identity markermulti-marker approach
BioProject
PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

Submission
EBI; 2023-02-06
Accession:
SAMEA112421520
ID:
33122654

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