Metagenome-assembled genome: SRR3965592_bin.39_CON... - BioSample

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Result Filters

Organism: Croceibacter atlanticus
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Croceibacter

Attributes

collection date	2011-01-23
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Atlantic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Marine microbial communities from the Deep Atlantic Ocean - MP0556 metagenome
sample name	SRR3965592_bin.39_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075496
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:30Z
INSDC last update	2023-01-03T00:32:30Z
INSDC status	public
Submitter Id	SRR3965592_bin.39_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.24
completeness software	CheckM
contamination score	1.33
geographic location (latitude)	-26.91
geographic location (longitude)	-21.43
metagenomic source	marine metagenome
sample derived from	SAMN05422117
scientific_name	Croceibacter atlanticus
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3965592 of study SRP080059.