U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

Uncultivated Pseudomonas sp. UBA5568 genome recovered from SRX823045

Identifiers
BioSample: SAMN06450660; Sample name: Pseudomonas sp. UBA5568; SRA: SRS2034589
Organism
Pseudomonas sp. UBA5568
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA5568
isolation sourcemetal
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX823045 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated98.81%
contamination_estimated0.51%
environmental_sampletrue
genome_coverage18.09
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749662.
Description

Uncultivated genome recovered from an assembly of the SRX823045 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06450660
ID:
6450660

BioProject SRA Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center