| broad-scale environmental context | mouse digestive system |
|---|
| collection date | 2021-01-01 |
|---|
| environmental medium | feces |
|---|
| geographic location | China |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | mouse gut metagenome |
|---|
| project name | In order to investigate the role of gut microbiome in anti-infection against SARS-CoV-2, we established high-throughput in vitro screening system for COVID-19 therapeutics by targeting the endoribonuclease (Nsp15), And we evaluated the activity inhibition of the target by substances of intestinal origin using a mouse model in an attempt to explore the interactions between gut microbiota and SARS-Cov-2. |
|---|
| sample name | SRR14698355_bin.2_metawrap_v1.3_MAG |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| ENA-FIRST-PUBLIC | 2022-11-14 |
|---|
| ENA-LAST-UPDATE | 2022-11-14 |
|---|
| External Id | SAMEA112134477 |
|---|
| INSDC center alias | EMG |
|---|
| INSDC center name | EMG |
|---|
| INSDC first public | 2022-11-14T20:32:30Z |
|---|
| INSDC last update | 2022-11-14T20:32:30Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | SRR14698355_bin.2_metawrap_v1.3_MAG |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | not provided |
|---|
| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
|---|
| binning software | metawrap v1.3 |
|---|
| broker name | EMG broker account, EMBL-EBI |
|---|
| completeness score | 100 |
|---|
| completeness software | CheckM |
|---|
| contamination score | 0.29 |
|---|
| geographic location (latitude) | 30.519 |
|---|
| geographic location (longitude) | 114.41 |
|---|
| local environmental context | digestive tube |
|---|
| metagenomic source | mouse gut metagenome |
|---|
| sample derived from | SAMN19471635 |
|---|
| sequencing method | Illumina NovaSeq 6000 |
|---|
| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;s__ |
|---|
| taxonomic identity marker | multi-marker approach |
|---|