Metagenome-assembled genome: ERR688636_bin.37_CONC... - BioSample

Metagenome-assembled genome: ERR688636_bin.37_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14085094; SRA: ERS11688226

Organism: uncultured Turicibacter sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Turicibacteraceae; Turicibacter; environmental samples

Attributes

collection date	2013-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Austria
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Colorectal cancer, a commonly diagnosed cancer in the elderly, often develops slowly from benign polyps called adenoma. The gut microbiota, with its critical roles in nutrient metabolism and immune modulation, is believed to be directly involved in colorectal carcinogenesis. The identity and functional capacity of the adenoma- or carcinoma-related gut microbe(s), however, have not been surveyed in a comprehensive manner. Here we perform metagenomewide association study (MGWAS) on stools from healthy controls, advanced adenoma and carcinoma patients, revealing gene markers from over 100 bacterial strains enriched in each group.
sample name	ERR688636_bin.37_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085094
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:39Z
INSDC last update	2023-01-03T00:33:39Z
INSDC status	public
Submitter Id	ERR688636_bin.37_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	98.19
completeness software	CheckM
contamination score	1.1
geographic location (latitude)	47.80151
geographic location (longitude)	13.04292
metagenomic source	human gut metagenome
sample derived from	SAMEA3136733
scientific_name	uncultured Turicibacter sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR688636 of study ERP008729.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
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Submission: EBI; 2023-01-04

Accession:: SAMEA14085094
ID:: 32561721

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Metagenome-assembled genome: ERR688636_bin.37_CONCOCT_v1.1_MAG

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