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Metagenome-assembled genome: SRR5189787_bin.3_MetaBAT_v2.12.1_MAG

Identifiers
BioSample: SAMEA9694635; SRA: ERS7418881
Organism
uncultured Ralstonia sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; environmental samples
Attributes
collection date2011-11-11
broad-scale environmental contextaquatic
local-scale environmental contextmarine
environmental mediumwater
geographic locationAtlantic Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameMicrobial metabolism in the oxic/anoxic transition zones (OATZ) of sediments can serve as a barrier preventing the emission of nutrients and greenhouse gases diffusing upwards to the overlying water column. However, microbial diversity and activities in this transition zone are not well understood. Here we propose to employ metagenomic shotgun DNA sequencing on three representative samples from oligotrophic sediment columns retrieved from North Pond during IODP Expedition 336. These sediments offer a unique opportunity to explore the OATZ in oligotrophic sediments, and are characterized by both an upper a lower OATZ. In short we aim at: elucidating the identity to the owners of functional genes that are not “accounted” for in the 16S rRNA libraries. Investigate the genomic inventory of uncharacterized sedimentary lineages of putative archaeal ammonium oxidizers. Expand the current knowledge of the microbial community and its potential activity in the OATZ.
sample nameSRR5189787_bin.3_MetaBAT_v2.12.1_MAG
ENA first public2021-09-16
ENA last update2021-09-16
ENA-CHECKLISTERC000047
External IdSAMEA9694635
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-16T16:25:22Z
INSDC last update2021-09-16T16:25:22Z
INSDC statuspublic
Submitter IdSRR5189787_bin.3_MetaBAT_v2.12.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareMetaBAT v2.12.1
broker nameEMG broker account, EMBL-EBI
completeness score93.58
completeness softwareCheckM
contamination score2.96
geographic location (latitude)22.81
geographic location (longitude)-46.09
metagenomic sourcemarine metagenome
sample derived fromSAMN06240274
sequencing methodIllumina HiSeq 1000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5189787 of study SRP097175.

BioProject
PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9694635
ID:
21733650

BioProject Nucleotide

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