MAG Loc080925-5-5m_bin-0833 from assembly ERS46004... - BioSample

MAG Loc080925-5-5m_bin-0833 from assembly ERS4600462

Identifiers: BioSample: SAMEA6944047; SRA: ERS4653933

Organism: uncultured Lamprocystis sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae; Lamprocystis; environmental samples

Attributes

ammonium	0.077609623593326
chloride	203.9
collection date	2008-09-25
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Switzerland
investigation type	metagenome
isolation source	lake water
nitrate	0.014514981880464
nitrite	0.005205622071838
oxygen	3.83985254966209
pH	7.54
project name	microbes in stratified freshwaters
sample name	Loc080925-5-5m_bin-0833
sulfate	136.3
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:02:37Z
External Id	SAMEA6944047
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:02:37Z
INSDC status	public
Submitter Id	Loc080925-5-5m_bin-0833
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	98.54
completeness software	checkm
contamination score	1.97
ferric iron	0
ferrous iron	0
fluoride	4.7
geographic location (depth)	5.5
geographic location (latitude)	47.01861111111111
geographic location (longitude)	6.996666666666667
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Lamprocystis;s__Lamprocystis purpurea
iron	0
metagenomic OTU	anoxic_mOTU_0412
metagenomic source	lake water metagenome
region	Neuchâtel
sample derived from	ERS4600462
sample owner	Stefan Bertilsson
scientific_name	uncultured Lamprocystis sp.
sequencing method	NovaSeq
site name	Loclat
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6944047
ID:: 15251866

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MAG Loc080925-5-5m_bin-0833 from assembly ERS4600462

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