MAG Loc080925-6m_bin-1213 from assembly ERS4600464

Identifiers: BioSample: SAMEA6946825; SRA: ERS4656708

Organism: uncultured Lamprocystis sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae; Lamprocystis; environmental samples

Attributes

ammonium	0.809357503187538
chloride	212.3
collection date	2008-09-25
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Switzerland
investigation type	metagenome
isolation source	lake water
nitrate	0
nitrite	0.005205622071838
oxygen	0.719999352984845
pH	5.53
project name	microbes in stratified freshwaters
sample name	Loc080925-6m_bin-1213
sulfate	135.2
temperature	13.2
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:03:41Z
External Id	SAMEA6946825
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:03:41Z
INSDC status	public
Submitter Id	Loc080925-6m_bin-1213
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	97.85
completeness software	checkm
conductivity.	0.548
contamination score	2.34
ferrous iron	3
fluoride	5.3
geographic location (depth)	6
geographic location (latitude)	47.01861111111111
geographic location (longitude)	6.996666666666667
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Lamprocystis;s__Lamprocystis purpurea
metagenomic OTU	anoxic_mOTU_0412
metagenomic source	lake water metagenome
region	Neuchâtel
sample derived from	ERS4600464
sample owner	Stefan Bertilsson
scientific_name	uncultured Lamprocystis sp.
sequencing method	NovaSeq
site name	Loclat
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6946825
ID:: 15258440

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MAG Loc080925-6m_bin-1213 from assembly ERS4600464

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