MAG YR_bin-2518 from assembly ERS4649312

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Result Filters

Organism: uncultured Mucilaginibacter sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter; environmental samples

Attributes

collection date	2015-08-13
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	YR_bin-2518
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:07:48Z
External Id	SAMEA6954690
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:07:48Z
INSDC status	public
Submitter Id	YR_bin-2518
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	93.92
completeness software	checkm
contamination score	1.67
geographic location (latitude)	61.21805555555556
geographic location (longitude)	25.2125
gtdb_taxonomy	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter;s__Mucilaginibacter gotjawali
metagenomic OTU	anoxic_mOTU_3497
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4649312
sample owner	Leyden Fernandez
scientific_name	uncultured Mucilaginibacter sp.
sequencing method	NovaSeq
site name	Ylinen Rajajärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water