Metagenome-assembled genome: zv17sAsFyx_bin.4.MAG

Organism: uncultured Corynebacterium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; environmental samples

Attributes

collection date	2014-04-10
broad-scale environmental context	human-associated habitat
local-scale environmental context	human skin
environmental medium	skin
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human skin
project name	Skin Microbial Genome Catalogue
sample name	zv17sAsFyx_bin.4.MAG
ENA first public	2022-06-13
ENA last update	2022-06-13
ENA-CHECKLIST	ERC000047
External Id	SAMEA110089325
INSDC center alias	NIH/NHGRI
INSDC center name	NIH/NHGRI
INSDC first public	2022-06-13T04:18:28Z
INSDC last update	2022-06-13T04:18:28Z
INSDC status	public
Submitter Id	zv17sAsFyx_bin.4.MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v.3.13.0
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning software	metaWRAP v1.2.1
completeness score	92.34
completeness software	CheckM v1.1.2
contamination score	92.34
geographic location (latitude)	38.984653
geographic location (longitude)	-77.09471
metagenomic source	human skin metagenome
sample derived from	SAMN04359896,SAMN04359897,SAMN04359898,SAMN04359899,SAMN04359900,SAMN04359901,SAMN04359902,SAMN04359903,SAMN04359904,SAMN04359905,SAMN04359906,SAMN04359907,SAMN04359908,SAMN04360131,SAMN04360132,SAMN04360133,SAMN04360134
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

Description: This sample represents a Pool HV Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3184111,SRR3184112,SRR3184113,SRR3184222,SRR3184223,SRR3184224,SRR3184225,SRR3184226,SRR3184227,SRR3184228,SRR3184229,SRR3184230,SRR3184231,SRR3184232,SRR3184233,SRR3184234,SRR3184235,SRR3184236,SRR3184237,SRR3184238,SRR3184239,SRR3184240,SRR3184241,SRR3184242,SRR3184243,SRR3184244,SRR3184245,SRR3184246,SRR3191622,SRR3191623,SRR3191624,SRR3191625,SRR3191626,SRR3191627,SRR3191628,SRR3191629,SRR3191630,SRR3191631,SRR3191632,SRR3191633,SRR3191634,SRR3191635,SRR3191636,SRR3191637,SRR3191638,SRR3191639,SRR3191640,SRR3191641.

BioProject: PRJEB47281 Skin Microbial Genome Catalogue
Retrieve all samples from this project

BioSample