| broad-scale environmental context | mouse digestive system |
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| collection date | 2021-02-01 |
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| environmental medium | feces |
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| geographic location | China |
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| investigation type | metagenome-assembled genome |
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| isolation source | mouse gut metagenome |
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| project name | Diet can usually cause changes in the intestinal microbiota, many of which contain one or more antibiotic resistance genes. Therefore, different diets will also have an impact on the intestinal antibiotic resistance genome. Here we share the changes of intestinal antibiotic resistant genome and bacterial microbiota under the effects of high-sugar, high-fat, high-protein diet and normal diet. |
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| sample name | SRR15431171_bin.10_metawrap_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-11-18 |
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| ENA-LAST-UPDATE | 2022-11-18 |
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| External Id | SAMEA112147208 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-11-18T20:20:09Z |
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| INSDC last update | 2022-11-18T20:20:09Z |
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| INSDC status | public |
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| Submitter Id | SRR15431171_bin.10_metawrap_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | not provided |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metawrap v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 93.84 |
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| completeness software | CheckM |
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| contamination score | 0.0 |
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| geographic location (latitude) | 39.6 |
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| geographic location (longitude) | 117.43 |
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| local environmental context | digestive tube |
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| metagenomic source | mouse gut metagenome |
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| sample derived from | SAMN20708358 |
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| sequencing method | Illumina HiSeq 4000 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__ |
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| taxonomic identity marker | multi-marker approach |
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