Metagenome-assembled genome: SRR5676475_bin.23_CON... - BioSample

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Result Filters

Organism: uncultured Cytophaga sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga; environmental samples

Attributes

collection date	2016-03-01
broad-scale environmental context	Engineered
local-scale environmental context	Wastewater
environmental medium	Wastewater
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	wastewater metagenome
project name	designed to identify antibiotic resistant profiles in sewage
sample name	SRR5676475_bin.23_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14036850
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:06Z
INSDC last update	2023-01-03T00:32:06Z
INSDC status	public
Submitter Id	SRR5676475_bin.23_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.37
completeness software	CheckM
contamination score	0.95
geographic location (latitude)	37.14
geographic location (longitude)	-80.41
metagenomic source	wastewater metagenome
sample derived from	SAMN07190887
scientific_name	uncultured Cytophaga sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5676475 of study SRP109028.