| broad-scale environmental context | Human digestive system |
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| collection date | 2019-05-01/2020-10-30 |
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| environmental medium | faeces |
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| geographic location | China |
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| investigation type | metagenome-assembled genome |
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| isolation source | human feces metagenome |
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| project name | Parkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation. |
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| sample name | SRR16280071_bin.9_MetaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-07-20T12:20:54Z |
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| ENA-LAST-UPDATE | 2023-07-20T12:20:54Z |
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| External Id | SAMEA114122598 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2023-07-20T12:20:54Z |
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| INSDC last update | 2023-07-20T12:20:54Z |
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| INSDC status | public |
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| Submitter Id | SRR16280071_bin.9_MetaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaspades v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 96.74 |
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| completeness software | CheckM |
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| contamination score | 0.8 |
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| geographic location (latitude) | 37.51 |
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| geographic location (longitude) | 122.12 |
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| local environmental context | colon |
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| metagenomic source | human feces metagenome |
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| sample derived from | SAMN22185190 |
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| scientific_name | Methanobrevibacter woesei |
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| sequencing method | Illumina HiSeq 2500 |
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| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter;s__Methanobrevibacter woesei |
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| taxonomic identity marker | multi-marker approach |
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