| broad-scale environmental context | Human digestive system |
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| collection date | not provided |
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| environmental medium | faeces |
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| geographic location | not provided |
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| investigation type | metagenome-assembled genome |
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| isolation source | human feces metagenome |
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| project name | INSPIRE is a study of duodenal mucosal resurfacing, through intestinal ablation, to investigate its potential for treatment of type 2 diabetes mellitus. In this study, the microbiome before and after intestinal ablation was studied in combination with a range of clinical markers. |
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| sample name | ERR9322424_bin.37_MetaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-07-13T16:22:50Z |
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| ENA-LAST-UPDATE | 2023-07-13T16:22:50Z |
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| External Id | SAMEA114060870 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2023-07-13T16:22:50Z |
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| INSDC last update | 2023-07-13T16:22:50Z |
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| INSDC status | public |
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| Submitter Id | ERR9322424_bin.37_MetaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaspades v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 98.92 |
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| completeness software | CheckM |
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| contamination score | 0.22 |
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| geographic location (latitude) | not provided |
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| geographic location (longitude) | not provided |
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| local environmental context | colon |
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| metagenomic source | human feces metagenome |
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| sample derived from | SAMEA13060056 |
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| scientific_name | Parabacteroides johnsonii |
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| sequencing method | unspecified |
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| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides johnsonii |
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| taxonomic identity marker | multi-marker approach |
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