Metagenome-Assembled Genome: SRR16244381_bin.11_Me... - BioSample

Metagenome-Assembled Genome: SRR16244381_bin.11_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114095548; SRA: ERS16079576

Organism: Sutterella wadsworthensis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella

Attributes

broad-scale environmental context	Human digestive system
collection date	2019-11-05
environmental medium	faeces
geographic location	Malaysia
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Study was done to investigate the association between the gut microbiome of healthy individuals compared to individuals who are diagnosed with schizophrenia in the Malaysian population.
sample name	SRR16244381_bin.11_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-20T12:20:57Z
ENA-LAST-UPDATE	2023-07-20T12:20:57Z
External Id	SAMEA114095548
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-20T12:20:57Z
INSDC last update	2023-07-20T12:20:57Z
INSDC status	public
Submitter Id	SRR16244381_bin.11_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	6.1263
geographic location (longitude)	100.3672
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMN22137996
scientific_name	Sutterella wadsworthensis
sequencing method	Illumina HiSeq 2500
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Sutterella;s__Sutterella wadsworthensis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16244381 of study SRP340462.

BioProject: PRJEB63177
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Submission: EBI; 2023-07-22

Accession:: SAMEA114095548
ID:: 36680973

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Metagenome-Assembled Genome: SRR16244381_bin.11_MetaWRAP_v1.3_MAG

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