| broad-scale environmental context | Pig digestive system |
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| collection date | 2016-08-01 |
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| environmental medium | Feces |
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| geographic location | Germany |
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| investigation type | metagenome-assembled genome |
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| isolation source | pig gut metagenome |
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| project name | We studied the intestinal microbiome in feces from sows, five days after farrowing, their piglets during suckling and two weeks after weaning, 5-day old artificially reared and formula-fed siblings, and FP infected with Clostridium difficile. |
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| sample name | ERR1855552_bin.3_metaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-07-21 |
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| ENA-LAST-UPDATE | 2022-07-21 |
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| External Id | SAMEA110402240 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-07-21T20:27:52Z |
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| INSDC last update | 2022-07-21T20:27:52Z |
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| INSDC status | public |
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| Submitter Id | ERR1855552_bin.3_metaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 91.99 |
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| completeness software | CheckM |
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| contamination score | 1.78 |
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| geographic location (latitude) | 52.45857 |
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| geographic location (longitude) | 13.288657 |
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| local environmental context | Intestine |
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| metagenomic source | pig gut metagenome |
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| sample derived from | SAMEA99913918 |
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| sequencing method | NextSeq 500 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Actinobacillus;s__Actinobacillus minor |
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| taxonomic identity marker | multi-marker approach |
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