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Metagenome-Assembled Genome: SRR17738125_bin.10_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114448270; SRA: ERS16434914
Organism
uncultured Fretibacterium sp.
cellular organisms; Bacteria; Thermotogati; Synergistota; Synergistia; Synergistales; Aminobacteriaceae; Fretibacterium; environmental samples
Attributes
broad-scale environmental contexthuman digestive system
collection datenot collected
environmental mediumteeth
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameMicrobiome associated with apical periodontitis
sample nameSRR17738125_bin.10_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR17738125_bin.10_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score100
completeness softwareCheckM
contamination score0.0
geographic location (latitude)44.9847
geographic location (longitude)-93.1819
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN25241540
scientific_nameuncultured Fretibacterium sp.
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Synergistetes;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Fretibacterium;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR17738125 of study SRP334054.

BioProject
PRJEB56742
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114448270
ID:
37603658

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