Metagenome-Assembled Genome: SRR23388446_bin.42_Me... - BioSample

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Result Filters

Organism: Treponema denticola
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema

Attributes

broad-scale environmental context	human digestive system
collection date	2022
environmental medium	subgingival plaque
geographic location	Hong Kong
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	Systematic Analysis of Site-Specific Biosynthetic Gene Clusters (BGCs) of Oral Microbiome in Periodontitis
sample name	SRR23388446_bin.42_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR23388446_bin.42_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	99.97
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	22.3193
geographic location (longitude)	114.1694
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMN33196939
scientific_name	Treponema denticola
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema denticola
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR23388446 of study SRP421773.