Canada Basin MAG CB27_AW.78

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Result Filters

Organism: Fidelibacterota bacterium TCS55
cellular organisms; Bacteria; Pseudomonadati; FCB group; Fidelibacterota; unclassified Fidelibacterota

Attributes

broad-scale environmental context	marine biome (ENVO:00000447)
collection date	2017-09-26
environmental medium	sea water (ENVO:00002149 )
geographic location	Arctic Ocean
isolation source	MAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at depth of 1000m
project name	Beaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample name	CB27_AW.78
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-28T00:34:17Z
ENA-LAST-UPDATE	2023-10-28T00:34:17Z
External Id	SAMEA114238046
INSDC center name	Concordia University
INSDC first public	2023-10-28T00:34:17Z
INSDC last update	2023-10-28T00:34:17Z
INSDC status	public
Submitter Id	CB27_AW.78
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Spades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parameters	Default parameters; minimum scaffold length 2500 bp
binning software	Metabat2 v.2.12.1
completeness score	72.53
completeness software	CheckM v.1.0.7
contamination score	3.62
geographic location (latitude)	73.0038
geographic location (longitude)	140.0007
local environmental context	1000m depth (ENVO:XXXXXXXX)
metagenomic source	aquatic metagenome
sample derived from	ERS15586183
scientific_name	Marinimicrobia bacterium TCS55
taxonomic identity marker	Multi-marker approach