Canada Basin MAG CB4_20m.26

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Result Filters

Organism: Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria

Attributes

broad-scale environmental context	marine biome (ENVO:00000447)
collection date	2017-09-24
environmental medium	sea water (ENVO:00002149 )
geographic location	Arctic Ocean
isolation source	MAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at depth of 20m
project name	Beaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample name	CB4_20m.26
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-28T00:34:17Z
ENA-LAST-UPDATE	2023-10-28T00:34:17Z
External Id	SAMEA114238132
INSDC center name	Concordia University
INSDC first public	2023-10-28T00:34:17Z
INSDC last update	2023-10-28T00:34:17Z
INSDC status	public
Submitter Id	CB4_20m.26
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Spades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parameters	Default parameters; minimum scaffold length 2500 bp
binning software	Metabat2 v.2.12.1
completeness score	50
completeness software	CheckM v.1.0.7
contamination score	0
geographic location (latitude)	75.0008
geographic location (longitude)	149.9945
local environmental context	1000m depth (ENVO:XXXXXXXX)
metagenomic source	aquatic metagenome
sample derived from	ERS15586180
scientific_name	Alphaproteobacteria bacterium
taxonomic identity marker	Multi-marker approach