Canada Basin MAG CB11b_Tmax.7

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Gemmatimonadales bacterium UBA6960
cellular organisms; Bacteria; Pseudomonadati; FCB group; Gemmatimonadota; Gemmatimonadia; Gemmatimonadales; unclassified Gemmatimonadales

Attributes

broad-scale environmental context	marine biome (ENVO:00000447)
collection date	2017-09-17T10:13:78
environmental medium	sea water (ENVO:00002149 )
geographic location	Arctic Ocean
isolation source	MAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at temperature maximum of the water column
project name	Beaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample name	CB11b_Tmax.7
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-27T20:28:51Z
ENA-LAST-UPDATE	2023-10-27T20:28:51Z
External Id	SAMEA114237896
INSDC center name	Concordia University
INSDC first public	2023-10-27T20:28:51Z
INSDC last update	2023-10-27T20:28:51Z
INSDC status	public
Submitter Id	CB11b_Tmax.7
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Spades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parameters	Default parameters; minimum scaffold length 2500 bp
binning software	Metabat2 v.2.12.1
completeness score	78.31
completeness software	CheckM v.1.0.7
contamination score	2.2
geographic location (latitude)	79.9957
geographic location (longitude)	149.9767
local environmental context	1000m depth (ENVO:XXXXXXXX)
metagenomic source	aquatic metagenome
sample derived from	ERS15586165
scientific_name	Gemmatimonadales bacterium UBA6960
taxonomic identity marker	Multi-marker approach