Canada Basin MAG CB6_Bottom.7

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Result Filters

Organism: Fidelibacterota bacterium TCS55
cellular organisms; Bacteria; Pseudomonadati; FCB group; Fidelibacterota; unclassified Fidelibacterota

Attributes

broad-scale environmental context	marine biome (ENVO:00000447)
collection date	2017-09-27
environmental medium	sea water (ENVO:00002149 )
geographic location	Arctic Ocean
isolation source	MAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at 10m above the bottom of the water column
project name	Beaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample name	CB6_Bottom.7
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-10-28T00:34:18Z
ENA-LAST-UPDATE	2023-10-28T00:34:18Z
External Id	SAMEA114238307
INSDC center name	Concordia University
INSDC first public	2023-10-28T00:34:18Z
INSDC last update	2023-10-28T00:34:18Z
INSDC status	public
Submitter Id	CB6_Bottom.7
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Spades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parameters	Default parameters; minimum scaffold length 2500 bp
binning software	Metabat2 v.2.12.1
completeness score	41.56
completeness software	CheckM v.1.0.7
contamination score	3.3
geographic location (latitude)	74.6947
geographic location (longitude)	146.6612
local environmental context	1000m depth (ENVO:XXXXXXXX)
metagenomic source	aquatic metagenome
sample derived from	ERS15586185
scientific_name	Marinimicrobia bacterium TCS55
taxonomic identity marker	Multi-marker approach