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Metagenome-assembled genome: iMGMC-918_1678881711

Identifiers
BioSample: SAMEA112816309; SRA: ERS14823851
Organism
Helicobacter typhlonius
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter
Attributes
broad-scale environmental contextmouse digestive system
collection datenot provided
environmental mediumfeces
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameThis sample represents a Metagenome-assembled genome assembled from runs of multiple projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).
sample nameiMGMC-918_1678881711
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-21
ENA-LAST-UPDATE2023-03-21
External IdSAMEA112816309
INSDC center aliasHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center nameHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public2023-03-21T16:19:47Z
INSDC last update2023-03-21T16:19:47Z
INSDC statuspublic
Submitter IdiMGMC-918_1678881711
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit
binning parametersdefault
binning softwaremetabat2
completeness score93.35
completeness softwareCheckM
contamination score1.64
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextmouse gut
metagenomic sourcemouse gut metagenome
sample derived 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scientific_nameHelicobacter typhlonius
sequencing methodIllumina HiSeq 2000, Illumina MiSeq, Illumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This is a Metagenome-assembled genome derived from the primary whole genome shotgun (WGS) of multiple metagenomic data sets ERP008710,ERP011836,ERP115625. This sample represents a Metagenome-assembled genome from the runs of the following projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

BioProject
PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project

Submission
EBI; 2023-03-22
Accession:
SAMEA112816309
ID:
33857709

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