Metagenome-assembled genome: ERR2762113_concoct_me... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115300565; Sample name: ERR2762113_concoct_merged.0; SRA: ERS18297751

Organism: Cadophora sp. DSE1049
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Leotiomycetes; Helotiales; Ploettnerulaceae; Cadophora; unclassified Cadophora

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
investigation type	metagenome-assembled genome
project name	Analysis of the genes and genomes present in Tara Oceans Polar Circle virus size fractions through shotgun DNA sequencing. Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.14.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	Cadophora sp. DSE1049
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA4397091
geographic location (longitude)	1.3648 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	95.86 %
contamination score	0.75 %
geographic location (latitude)	76.1246 DD
scientific_name	Cadophora sp. DSE1049
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2000
completeness software	EukCC_v2.1.0

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2762113 of study ERP010882.