Metagenome-assembled genome: extra-SRR2174314.22_1... - BioSample

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Result Filters

Organism: Bacteroides acidifaciens
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Attributes

broad-scale environmental context	mouse digestive system
collection date	2014-02-15
environmental medium	feces
geographic location	Hong Kong
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Metagenomic study of the effect of probiotics on hepatocellular tumor growth in mice
sample name	extra-SRR2174314.22_1677795922
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112724733
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T04:21:54Z
INSDC last update	2023-03-06T04:21:54Z
INSDC status	public
Submitter Id	extra-SRR2174314.22_1677795922
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	93.83
completeness software	CheckM
contamination score	2.45
geographic location (latitude)	22.267265
geographic location (longitude)	114.12908
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMN04000093
scientific_name	Bacteroides acidifaciens
sequencing method	Illumina HiSeq 1500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR2174314 of study SRP062583.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project