Metagenome-assembled genome: ERR2762108_concoct_178

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Result Filters

Identifiers: BioSample: SAMEA115300587; Sample name: ERR2762108_concoct_178; SRA: ERS18297773

Organism: Halopseudomonas pelagia
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Halopseudomonas

Attributes

broad-scale environmental context	water
collection date	not provided
environmental medium	tara
investigation type	metagenome-assembled genome
project name	Analysis of the genes and genomes present in Tara Oceans Polar Circle virus size fractions through shotgun DNA sequencing. Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.14.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	Halopseudomonas pelagia
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA4397023
geographic location (longitude)	0.2177 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	99.76 %
contamination score	0.2 %
geographic location (latitude)	67.1675 DD
scientific_name	Halopseudomonas pelagia
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2000
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2762108 of study ERP010882.