| broad-scale environmental context | In vitro culture derivated from samples from the gut of chinchilla (Chinchilla lanigera) |
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| collection date | 2021-08 |
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| environmental medium | Incubated at 37ºC |
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| geographic location | Czech Republic |
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| investigation type | metagenome-assembled genome |
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| isolation source | The genomes here correspond to 24 metagenome-assembled genomes of the 30 bacteria identified that grow together with Monocercomonoides exilis in TYSGM-9 medium. |
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| project name | PRJEB70623 |
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| sample name | ena-SAMPLE-TAB-10-01-2024-09:53:06:041-238951 |
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| ENA-CHECKLIST | ERC000050 |
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| ENA-FIRST-PUBLIC | 2024-02-29T00:36:26Z |
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| ENA-LAST-UPDATE | 2024-02-29T00:36:26Z |
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| External Id | SAMEA115094479 |
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| INSDC center name | BIOCEV |
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| INSDC first public | 2024-02-29T00:36:26Z |
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| INSDC last update | 2024-02-29T00:36:26Z |
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| INSDC status | public |
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| Submitter Id | ena-SAMPLE-TAB-10-01-2024-09:53:06:041-238951 |
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| assembly quality | Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs |
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| assembly software | metaSPAdes v.3.14.0, k-mers set 21,33,55,77,99,127, default parameters otherwise |
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| binning parameters | coverage and kmer |
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| binning software | MaxBin v2.2.7 |
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| completeness score | 99.1 |
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| completeness software | MaxBin v2.2.7 marker set 107 |
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| contamination score | 5.7 |
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| geographic location (latitude) | +49.980897 |
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| geographic location (longitude) | +14.487539 |
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| local environmental context | TYSGM-9 medium |
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| metagenomic source | rodent metagenome |
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| sample derived from | SAMEA115084009-SAMEA115084017 |
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| scientific_name | Tissierella sp. |
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| sequencing method | HiSeq4000 |
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| taxonomic identity marker | 16S gene |
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