Metagenome-assembled genome: public_SRR1531545_met... - BioSample

Metagenome-assembled genome: public_SRR1531545_metawrap_bin.4

Identifiers: BioSample: SAMEA115955223; SRA: ERS20915012

Organism: uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples

Attributes

broad-scale environmental context	Thallus of Leptogium austroamericanum lichen
collection date	2011-07-02
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	A lichen is a symbiotic association of a fungus and a photosynthesizing partner, such as a green algae or cyanobacterium. The symbiosis is usually obligate for the fungus. The goal of this study was to generate genome information for phylogenetic analysis from the cultured mycobionts (lichenizing fungi) and lichen thalli spanning the diversity of lichenized groups in the classes Lecanoromycetes, Eurotiomycetes, Dothidiomycetes, Arthoniomycetes and Lichinomycetes. Leptogium austroamericanum is a lichen composed of the lichenizing fungus Leptogium austroamericanum (for which the association is named) and its cyanobacterial photobiont. The metagenome data here include sequences from the lichenizing fungus Leptogium austroamericanum (class Lecanoromycetes, subclass Lecanoromycetidae), the cyanobacterial photobiont, and possibly endolichenic fungi or prokaryotes.
sample name	public_SRR1531545_metawrap_bin.4
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR1531545_metawrap_bin.4
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	71.42
completeness software	CheckM_v1.1.3
contamination score	1.7
geographic location (latitude)	35.99000000
geographic location (longitude)	-79.01000000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN02943512
scientific_name	uncultured Sphingomonas sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1531545 of study SRP045073.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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Submission: EBI; 2024-09-20

Accession:: SAMEA115955223
ID:: 43837268

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Metagenome-assembled genome: public_SRR1531545_metawrap_bin.4

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