Metagenome-assembled genome: private_GTX0163_metaw... - BioSample

Metagenome-assembled genome: private_GTX0163_metawrap_bin.7

Identifiers: BioSample: SAMEA115955476; SRA: ERS20915265

Organism: uncultured Flavihumibacter sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Flavihumibacter; environmental samples

Attributes

broad-scale environmental context	Thallus of Heterodermia speciosa lichen
collection date	not provided
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Lichen fungi live in a symbiotic association and have no known aposymbiotic stage. A recent study postulated that some of them have lost oxidative phosphorylation and rely on their algal partners for ATP. This claim originated from an apparent lack of ATP9, a gene encoding one subunit of ATP synthase, from a few mitochondrial genomes. We show that while these fungi indeed have lost the mitochondrial ATP9, each retained a nuclear copy of this gene. Our analysis reaffirms that lichen fungi are autonomous in energy production.
sample name	private_GTX0163_metawrap_bin.7
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	private_GTX0163_metawrap_bin.7
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	86.9
completeness software	CheckM_v1.1.3
contamination score	1.64
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMEA7758529
scientific_name	uncultured Flavihumibacter sp.
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR5059413 of study ERP126164.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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Submission: EBI; 2024-09-20

Accession:: SAMEA115955476
ID:: 43841051

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Metagenome-assembled genome: private_GTX0163_metawrap_bin.7

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