Metagenome-assembled genome: public_SRR14721939_co... - BioSample

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Result Filters

Organism: Cladonia polycarpoides
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Lecanoromycetes; OSLEUM clade; Lecanoromycetidae; Lecanorales; Lecanorineae; Cladoniaceae; Cladonia

Attributes

broad-scale environmental context	Thallus of Cladonia polycarpoides lichen
collection date	2016-12-17
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Genome sequences from the NSF Dimensions in Biodiversity Grant to study the Lichens of the Southern Appalachians
sample name	public_SRR14721939_concoct_merged.0
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR14721939_concoct_merged.0
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	81.2
completeness software	EukCC_v2
contamination score	0.38
geographic location (latitude)	34.36786000
geographic location (longitude)	-85.62986000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN19302763
scientific_name	Cladonia polycarpoides
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14721939 of study SRP322526.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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