Metagenome-assembled genome: public_SRR13125477_me... - BioSample

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Result Filters

Organism: Trebouxia sp.
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae; Trebouxiales; Trebouxiaceae; Trebouxia; unclassified Trebouxia

Attributes

broad-scale environmental context	Thallus of Everniopsis trulla lichen
collection date	2018-09
environmental medium	lichen thallus
geographic location	Peru
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Nine Parmeliaceae lichens genome sequencing data used in:"Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota)"
sample name	public_SRR13125477_metabat2_bin.13
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR13125477_metabat2_bin.13
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	84.6
completeness software	EukCC_v2
contamination score	4.4
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN16881806
scientific_name	Trebouxia sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13125477 of study SRP293991.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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