| broad-scale environmental context | aquatic biome |
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| collected by | JOHANA ROTTEROVA |
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| collection date | 2021-10-02 |
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| depth | 1899-12-30 |
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| environmental medium | ciliate culture |
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| geographic location | USA |
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| host life stage | vegetative cell |
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| host | Metopus sp. strain NARRIV |
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| host taxonomy ID | 2980491 (2980491) |
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| identified by | JOHANA ROTTEROVA |
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| investigation type | metagenome-assembled genome |
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| isolation source | Ciliate: Metopus sp. strain NARRIV |
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| tissue | WHOLE ORGANISM |
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| project name | ASG |
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| sample collection device or method | multicore sampler |
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| sample name | 1aa78899-e997-4579-a1ce-6e823d9c38b0 |
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| specimen voucher | NOT PROVIDED |
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| 16S recovered | Yes |
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| 16S recovery software | PROKKA (version 1.14.5) |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-10-17T09:43:44Z |
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| ENA-LAST-UPDATE | 2023-10-17T09:43:44Z |
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| External Id | SAMEA114503681 |
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| GAL | University of British Columbia |
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| GAL_sample_id | NOT PROVIDED |
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| INSDC center alias | Tree of Life Programme |
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| INSDC center name | tree of life programme |
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| INSDC first public | 2023-10-17T09:43:44Z |
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| INSDC last update | 2023-10-17T09:43:44Z |
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| INSDC status | public |
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| MAG coverage software | Minimap2 (version 2.24-r1122) |
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| Submitter Id | 1aa78899-e997-4579-a1ce-6e823d9c38b0 |
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| assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
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| assembly software | metaMDBG |
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| barcoding center | UNIVERSITY OF RHODE ISLAND |
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| binning parameters | coverage; graph; hic-mapping |
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| binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR |
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| collecting institution | UNIVERSITY OF RHODE ISLAND |
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| completeness score | 100 |
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| completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
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| contamination score | 0.89 |
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| culture_or_strain_id | NARRIV strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA |
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| geographic location (latitude) | 41.49 |
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| geographic location (longitude) | -71.42 |
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| geographic location (region and locality) | RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND |
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| habitat | stratified brackish river anoxic sediment |
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| identifier_affiliation | UNIVERSITY OF RHODE ISLAND |
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| local environmental context | estuarine biome |
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| metagenomic source | ciliate metagenome |
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| number of standard tRNAs extracted | 47 |
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| original collection date | 2019-08-26 |
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| original collection location | USA | RHODE ISLAND | NARRAGANSETT | NARROW RIVER |
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| original geographic location (latitude) | 41.502028 |
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| original geographic location (longitude) | -71.450139 |
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| sample derived from | SAMEA114503583 |
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| scientific_name | Desulfocapsaceae bacterium |
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| sequencing method | Pacbio Sequel II |
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| specimen_id | UOBC0000022 |
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| tRNA extraction software | PROKKA (version 1.14.5) |
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| taxonomic classification | GTDB-TK (version 2.1.1); GTDB (release 207_v2) |
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| taxonomic identity marker | taxonomic classification defined by topology and ANI |
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| tolid | piMetSpef1.Desulfocapsaceae_1 |
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