Fram Strait/WSC water column MAG - FRAM_RAS_F4_07_... - BioSample

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Result Filters

Organism: uncultured Candidatus Pelagibacter sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; Candidatus Pelagibacteraceae; Candidatus Pelagibacter; environmental samples

Attributes

broad-scale environmental context	marine pelagic biome [ENVO:01000023]
collection date	2017-07-22
depth	29.02
environmental medium	sea water [ENVO:00002149]
geographic location	Svalbard
isolation source	seawater
project name	FRAM_RAS_WSC_F4_metagenomes
sample name	FRAM_RAS_F4_07_2017_4-MAG_58
ENA first public	2024-10-09
ENA-CHECKLIST	ERC000047
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC status	public
Submitter Id	FRAM_RAS_F4_07_2017_4-MAG_58
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Flye v2.9.1
binning parameters	Default settings
binning software	Metabat2 v2.15
completeness score	86.02
completeness software	CheckM v1.2.0
contamination score	1.9
geographic location (latitude)	79.01
geographic location (longitude)	6.96
local environmental context	marine photic zone [ENVO:00000209]
metagenomic source	marine metagenome
sample derived from	ERR12117702,ERS16474236
scientific_name	uncultured Candidatus Pelagibacter sp.
taxonomic identity marker	16S rRNA gene and multi-gene marker approach

Description: Metagenome-assembled genome generated from a water column sample collected in West Spitsbergen Current, Fram Strait - specifically derived from ERR12117702,ERS16474236