| broad-scale environmental context | aquatic biome |
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| collected by | PHIL ZEROFSKI |
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| collection date | not provided |
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| environmental medium | adult annelid tissue |
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| geographic location | USA |
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| host life stage | adult |
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| host | Chaetopterus dewysee |
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| host sex | not collected |
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| host taxonomy ID | 2704165 (2704165) |
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| identified by | GREG ROUSE |
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| investigation type | metagenome-assembled genome |
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| isolation source | Annelid: Chaetopterus dewysee |
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| tissue | WHOLE ORGANISM |
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| project name | ASG |
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| sample collection device or method | hand-collected via SCUBA diving |
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| sample name | 03e4f5d5-dacf-4468-93a7-e7b19fb300a1 |
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| 16S recovered | Yes |
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| 16S recovery software | PROKKA (version 1.14.5) |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-11-24T12:35:00Z |
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| ENA-LAST-UPDATE | 2023-11-24T12:35:00Z |
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| External Id | SAMEA114718417 |
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| GAL | Queen Mary University of London |
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| GAL_sample_id | NOT PROVIDED |
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| INSDC center name | Tree of Life Programme |
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| INSDC first public | 2023-11-24T12:35:00Z |
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| INSDC last update | 2023-11-24T12:35:00Z |
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| INSDC status | public |
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| MAG coverage software | Minimap2 (version 2.24-r1122) |
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| Submitter Id | 03e4f5d5-dacf-4468-93a7-e7b19fb300a1 |
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| assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
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| assembly software | metaMDBG |
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| barcoding center | NOT PROVIDED |
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| binning parameters | coverage; graph; hic-mapping |
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| binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7) |
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| collecting institution | SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO |
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| completeness score | 94 |
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| completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
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| contamination score | 0 |
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| geographic location (latitude) | 32.89 |
|---|
| geographic location (longitude) | -117.26 |
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| geographic location (region and locality) | California | offshore San Diego | Torrey Pines artificial reef |
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| habitat | Seafloor. Associated with mussels Mytilus californianus. |
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| identifier_affiliation | SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO |
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| local environmental context | marine benthic biome |
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| metagenomic source | annelid metagenome |
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| number of standard tRNAs extracted | 46 |
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| proxy voucher | SIO:BIC:A14190 |
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| proxy voucher url | https://sioapps.ucsd.edu/collections/bi/catalog/A14190/ |
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| sample derived from | SAMEA114718413 |
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| scientific_name | Spirochaetia bacterium |
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| sequencing method | Pacbio Sequel II |
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| specimen_id | QMOUL0000158 |
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| tRNA extraction software | PROKKA (version 1.14.5) |
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| taxonomic classification | GTDB-TK (version 2.3.2); GTDB (release 214) |
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| taxonomic identity marker | taxonomic classification defined by topology and ANI |
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| tolid | wdChaDewy1.Spirochaetia_1 |
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| voucher institution url | https://ror.org/04v7hvq31 |
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