Metagenome-assembled genome: SRR23946436_concoct_52

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Result Filters

Organism: Corynebacterium casei
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium

Attributes

broad-scale environmental context	poultry
collection date	2022-07-16
environmental medium	fecal material
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	Metagenomic sequencing data describing the microbial composition of chicken feces. Chicken were split into three cohorts undergoing various interventions.
sample name	SRR23946436_concoct_52
ENA first public	2024-11-29
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR23946436_concoct_52
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MetaSPAdes_v3.15.5
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	85.37
completeness software	CheckM2_v1.0.1
contamination score	0.6
geographic location (latitude)	49.17000000
geographic location (longitude)	6.53000000
local environmental context	chicken
metagenomic source	chicken gut metagenome
sample derived from	SAMN33870109
scientific_name	Corynebacterium casei
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR23946436 of study SRP428893.